By years of investigation and analysis of compound fertilizer and organic fertilizer qualities in Beijing metropolitan agricultural region，the quality status and problems of them were showed in the study.The quality of compound fertilizer was better than that of organic fertilizer in Beijing.Their product percent of pass was 87.2% and 24.5% respectively.Rejected items of compound fertilizer included the nutrition content，water content and the percentage of water soluble phosphorus to total available phosphorus in the fertilizer.The main rejected items of organic fertilizer were organic matter content，pH，to- tal nutrition content and water content in it.Low level production technology of organic fertilizer enterprises，lack of corre- sponding management mechanism and forceful supervision and management were the main reasons of low organic fertilizer quality in Beijing.Finally，countermeasures and advices were suggested for those problems.